Illumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis.
This MCP Bundle Server is compatible with any MCP client including Claude Desktop, Cursor, and other Model Context Protocol implementations.
Pull a list of app-generated results stored in app sessions that are part of your analysis workflow on Illumina Basespace. Useful for reviewing the re...
Access files from app results within a specific app session on Illumina Basespace, helping you to download or inspect analysis outputs. This is useful...
Get a list of application sessions utilized within your Illumina Basespace environment. Use this to track active and completed app sessions for differ...
Retrieve a list of all your projects on Illumina Basespace, useful for tracking and managing different genomic data analyses. Use this when you need a...
List all files associated with a particular sequencing run on Illumina Basespace. This is particularly useful when you need to access run-specific dat...
Fetch a list of all sequencing runs associated with your Illumina Basespace account. Ideal for tracking the progress and details of multiple sequencin...
Retrieve file sets related to a specific sample in a project, which is crucial for accessing raw data and outputs related to genomic analyses. Use thi...
Access a list of all samples within a specified project on Illumina Basespace. Use this to get detailed information about samples linked to genomic ex...
Connect this Illumina BaseSpace Tools MCP Bundle Server to any MCP client in minutes
Compatible with Claude Desktop, Cursor, and all Model Context Protocol clients
Model Context Protocol lets AI tools call external capabilities securely through a single URL. This bundle groups tools behind an MCP endpoint that many clients can use.
Skip the manual setup! Use the .mcpb file format for one-click installation. Check the Claude Desktop tab for setup instructions.
Select ChatGPT, Cursor, Claude Code, or another tab for copy-paste config.