BridgeDB Skill

Open Data

Domain knowledge for your AI assistant — workflow patterns, data model concepts, and gotchas for BridgeDB tools.

13 tools
SKILL.md

BridgeDB
SKILL.md

Domain knowledge for BridgeDB — gene/protein/metabolite identifier mapping

BridgeDB

Data Model

  • Organisms use short codes (e.g. Hs = Homo sapiens). All operations require organism.
  • Data sources: Source and target systems. system_code from list. Required for mappings.
  • Mappings: Check supported mappings; get cross-references. Need system_code and identifier.
  • Search: By query. Returns identifier for use in attribute and xref operations.
  • Hierarchy: organism → system_code (from sourceDataSources) → identifier (from search) → xrefs/attributes.

Use with BridgeDB Bundle

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What is a Skill?

BridgeDB Skill - SKILL.md for Claude Code, Cursor & More