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Illumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis.
Opens MCPBundles Studio with this server selected. After sign-in, chat and run tools from the same thread.
Browse all toolsDomain knowledge for Illumina BaseSpace — workflow patterns, data models, and gotchas for your AI agent.
Illumina BaseSpace is a cloud platform for genomic data from next-generation sequencing. Store, share, and process NGS datasets.
Access files from app results within a specific app session on Illumina Basespace, helping you to download or inspect analysis outputs. This is useful...
Pull a list of app-generated results stored in app sessions that are part of your analysis workflow on Illumina Basespace. Useful for reviewing the re...
Get a list of application sessions utilized within your Illumina Basespace environment. Use this to track active and completed app sessions for differ...
Retrieve a list of all your projects on Illumina Basespace, useful for tracking and managing different genomic data analyses. Use this when you need a...
List all files associated with a particular sequencing run on Illumina Basespace. This is particularly useful when you need to access run-specific dat...
Fetch a list of all sequencing runs associated with your Illumina Basespace account. Ideal for tracking the progress and details of multiple sequencin...
Retrieve file sets related to a specific sample in a project, which is crucial for accessing raw data and outputs related to genomic analyses. Use thi...
Access a list of all samples within a specified project on Illumina Basespace. Use this to get detailed information about samples linked to genomic ex...
Illumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis. It provides 8 tools that AI agents can use through the Model Context Protocol (MCP).
Add the MCPBundles server URL to your MCP client configuration (Claude Desktop, Cursor, VS Code, etc.). The URL format is: https://mcp.mcpbundles.com/bundle/illumina-basespace. Authentication is handled automatically.
Illumina BaseSpace provides 8 tools that can be called by AI agents, along with a SKILL.md that gives your AI agent domain knowledge about when and how to use them.
Illumina BaseSpace uses API Key. Illumina BaseSpace requires credentials. Connect via MCPBundles and authentication is handled automatically.
Connect Illumina BaseSpace to any MCP client in minutes
https://mcp.mcpbundles.com/bundle/illumina-basespaceThe link prefills the Add custom connector dialog — you still review the values and click Add, then Connect to complete OAuth.
Illumina BaseSpace and paste the MCP URL into Remote MCP server URL.Custom connectors at claude.ai require a paid Claude plan (Pro, Max, Team, or Enterprise).
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