Connect your account, then chat with AI to run tools.
Illumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis.
This listing identifies a third-party integration. MCPBundles is not affiliated with, sponsored by, or endorsed by the service or its operator unless stated on this page.
Live probe refreshed Oct 9, 2026 · Endpoint host mcp.mcpbundles.com
Domain knowledge for Illumina BaseSpace — workflow patterns, data models, and gotchas for your AI agent.
Illumina BaseSpace is a cloud platform for genomic data from next-generation sequencing. Store, share, and process NGS datasets.
Illumina Basespace List App Files
Access files from app results within a specific app session on Illumina Basespace, helping you to download or inspect a…
Illumina Basespace List Appresults
Pull a list of app-generated results stored in app sessions that are part of your analysis workflow on Illumina Basespa…
Illumina Basespace List Appsessions
Get a list of application sessions utilized within your Illumina Basespace environment.
Illumina Basespace List Projects
Retrieve a list of all your projects on Illumina Basespace, useful for tracking and managing different genomic data ana…
Illumina Basespace List Run Files
List all files associated with a particular sequencing run on Illumina Basespace.
Illumina Basespace List Runs
Fetch a list of all sequencing runs associated with your Illumina Basespace account.
Illumina Basespace List Sample Files
Retrieve file sets related to a specific sample in a project, which is crucial for accessing raw data and outputs relat…
Illumina Basespace List Samples
Access a list of all samples within a specified project on Illumina Basespace.
Connect Illumina BaseSpace to any MCP client in minutes
https://mcp.mcpbundles.com/bundle/illumina-basespaceThe link prefills the Add custom connector dialog — you still review the values and click Add, then Connect to complete OAuth.
Illumina BaseSpace and paste the MCP URL into Remote MCP server URL.Custom connectors at claude.ai require a paid Claude plan (Pro, Max, Team, or Enterprise).
MCPBundles publishes this directory for MCP discovery. Except where we host or operate an offering, third-party services run under their own terms. Product and company names on this page are used in a descriptive, identifying way (including under nominative fair use where applicable); they remain the property of their owners. Nothing here grants you rights in those marks, and nothing here is an offer to sell a third party's services. Terms
Opens MCPBundles Studio with this server selected. After sign-in, chat and run tools from the same thread.
Browse all toolsIllumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis. It provides 8 tools that AI agents can use through the Model Context Protocol (MCP).
Add the MCPBundles server URL to your MCP client configuration (Claude Desktop, Cursor, VS Code, etc.). The URL format is: https://mcp.mcpbundles.com/bundle/illumina-basespace. Authentication is handled automatically.
© 2026 ThinkChain Inc. All rights reserved.
Illumina BaseSpace provides 8 tools that can be called by AI agents, along with a SKILL.md that gives your AI agent domain knowledge about when and how to use them.
Illumina BaseSpace uses API Key. Illumina BaseSpace requires credentials. Connect via MCPBundles and authentication is handled automatically.
MCPBundles is an independent platform built on the open Model Context Protocol standard. MCPBundles is not affiliated with, sponsored by, or endorsed by Anthropic PBC.
Other MCP servers in this category from the directory index